6LTJ Gene Regulation date Jan 22, 2020
title Structure Of Nucleosome-Bound Human Baf Complex
authors H.Shuang, W.Zihan, T.Yuan, Y.Zishuo, Y.Jiali, W.Xinxin, L.Jie, L.Bi X.Yanhui
compound source
Molecule: Histone H3.3
Chain: A, E
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Histone H2a Type 1
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Histone H2b
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: H2b
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Transcription Activator Brg1
Chain: I
Synonym: Atp-Dependent Helicase Smarca4,Brg1-Associated Fac Baf190a;
Ec: 3.6.4.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarca4
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Actin-Like Protein 6a
Chain: J
Synonym: Actin-Related Protein Baf53a,Arpnbeta,Brg1-Associa 53a,Baf53a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actl6a, Baf53, Baf53a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Actin, Cytoplasmic 1
Chain: K
Synonym: Beta-Actin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actb
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: At-Rich Interactive Domain-Containing Protein 1a
Chain: L
Synonym: Arid Domain-Containing Protein 1a,B120,Brg1-Associ Factor 250,Baf250,Brg1-Associated Factor 250a,Baf250a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arid1a, Baf250, Baf250a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily B Member 1;
Chain: M
Fragment: Unp Residues 1-113, Unp Residues 172-385
Synonym: Brg1-Associated Factor 47,Baf47
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcb1, Baf47
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf Complex Subunit Smarcc2
Chain: N, O
Synonym: Brg1-Associated Factor 170,Baf170
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcc2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily D Member 1;
Chain: P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcd1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily E Member 1;
Chain: Q
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarce1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Zinc Finger Protein Ubi-D4
Chain: R
Fragment: Unp Residues 1-100, Unp Residues 209-391
Synonym: Apoptosis Response Zinc Finger Protein,Brg1-Associ Factor 45d,Baf45d;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpf2, Baf45d
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Dna (119-Mer)
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (119-Mer)
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand
enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, G


E, A


F, B


H, D


I
  • RNA polymerase I CORE elemen...

  • npBAF complex
  • J
  • transcription coactivator ac...

  • npBAF complex
  • K


    L


    M


    N, O


    P


    Q
  • transcription coactivator ac...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (648 Kb) [Save to disk]
  • Biological Unit Coordinates (6ltj.pdb1.gz) 621 Kb
  • CSU: Contacts of Structural Units for 6LTJ
  • Retrieve 6LTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LTJ from S2C, [Save to disk]
  • View 6LTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6LTJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ltj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ltj_J] [6ltj_B] [6ltj_E] [6ltj_Y] [6ltj_X] [6ltj_F] [6ltj_P] [6ltj_C] [6ltj_K] [6ltj_R] [6ltj_I] [6ltj_G] [6ltj_L] [6ltj_Q] [6ltj_N] [6ltj_M] [6ltj_O] [6ltj_A] [6ltj_H] [6ltj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6LTJ
  • Community annotation for 6LTJ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science