6LVN Viral Protein date Feb 04, 2020
title Structure Of The 2019-Ncov Hr2 Domain
authors Y.Zhu, F.Sun
compound source
Molecule: Spike Protein S2'
Chain: A, B, C, D
Fragment: Hr2 Domain
Synonym: Spike Protein S2
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.195 49.729 89.576 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.47 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (6lvn.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 6LVN
  • Structure Factors (194 Kb)
  • Retrieve 6LVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LVN from S2C, [Save to disk]
    • View 6LVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LVN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6lvn from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lvn_C] [6lvn_D] [6lvn_A] [6lvn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LVN
  • Community annotation for 6LVN at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science