6M0J Viral Protein Hydrolase date Feb 21, 2020
title Crystal Structure Of Sars-Cov-2 Spike Receptor-Binding Domai With Ace2
authors X.Wang, J.Lan, J.Ge, J.Yu, S.Shan
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A
Synonym: Ace-Related Carboxypeptidase,Angiotensin-Convertin Homolog,Aceh,Metalloprotease Mprot15;
Ec: 3.4.17.23,3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Spike Receptor Binding Domain
Chain: E
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes

Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 41 21 2
R_factor 0.192 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.670 104.670 228.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand CL, NAG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor., Lan J, Ge J, Yu J, Shan S, Zhou H, Fan S, Zhang Q, Shi X, Wang Q, Zhang L, Wang X, Nature. 2020 Mar 30. pii: 10.1038/s41586-020-2180-5. doi:, 10.1038/s41586-020-2180-5. PMID:32225176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (6m0j.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 6M0J
  • CSU: Contacts of Structural Units for 6M0J
  • Structure Factors (1864 Kb)
  • Retrieve 6M0J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M0J from S2C, [Save to disk]
  • View 6M0J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M0J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6m0j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m0j_A] [6m0j_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M0J
  • Community annotation for 6M0J at PDBWiki (http://pdbwiki.org)

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