6M0V Hydrolase Dna Rna date Feb 22, 2020
title Crsytal Structure Of Streptococcus Thermophilus Cas9 In Comp The Ggaa Pam
authors Y.Zhang, H.Zhang, X.Xu, Y.Wang, W.Chen, Y.Wang, Z.Wu, N.Tang, Y.Wang J.Gan, Q.Ji
compound source
Molecule: Rna (71-Mer)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308

Molecule: Dna (28-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308

Molecule: Dna (5'-D(Apapgpgpapapgpc)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308

Molecule: Crispr-Associated Endonuclease Cas9 1
Chain: A
Synonym: Cas9
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Streptococcus Thermophilus Lmd-9
Organism_taxid: 322159
Strain: Lmd-9
Gene: Cas9-1, Csn1, Ster_0709
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.213 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
321.839 75.078 70.109 90.00 93.21 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BA, MG enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (6m0v.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 6M0V
  • CSU: Contacts of Structural Units for 6M0V
  • Structure Factors (1082 Kb)
  • Retrieve 6M0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M0V from S2C, [Save to disk]
  • View 6M0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m0v_B] [6m0v_A] [6m0v_D] [6m0v_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M0V
  • Community annotation for 6M0V at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science