6M0X Dna Binding Protein date Feb 23, 2020
title Crystal Structure Of Streptococcus Thermophilus Cas9 In Comp Agga Pam
authors Y.Zhang, H.Zhang, X.Xu, Y.Wang, W.Chen, Y.Wang, Z.Wu, N.Tang, Y.Wang J.Gan, Q.Ji
compound source
Molecule: Crispr-Associated Endonuclease Cas9 1
Chain: A
Synonym: Cas9
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Streptococcus Thermophilus Lmd-9
Organism_taxid: 322159
Strain: Lmd-9
Gene: Cas9-1, Csn1, Ster_0709
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (71-Mer)
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308

Molecule: Dna (28-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308

Molecule: Dna (5'-D(Apapapgpgpapgpc)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 1308
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
322.165 75.250 70.008 90.00 93.28 90.00
method X-Ray Diffractionresolution 2.56 Å
ligand BA, MG enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (449 Kb) [Save to disk]
  • Biological Unit Coordinates (6m0x.pdb1.gz) 433 Kb
  • LPC: Ligand-Protein Contacts for 6M0X
  • CSU: Contacts of Structural Units for 6M0X
  • Structure Factors (1059 Kb)
  • Retrieve 6M0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M0X from S2C, [Save to disk]
  • View 6M0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M0X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6m0x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m0x_C] [6m0x_D] [6m0x_B] [6m0x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M0X
  • Community annotation for 6M0X at PDBWiki (http://pdbwiki.org)

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