6M3D Dna Binding Protein Dna date Mar 03, 2020
title X-Ray Crystal Structure Of Tandemly Connected Engrailed Home (Ehd) With R53a Mutations And Dna Complex
authors T.Sunami, Y.Hirano, T.Tamada, H.Kono
compound source
Molecule: Dna (5'-D(Tpapaptpcpcptpapaptpcpc)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpgpaptptpapgpgpaptptpa)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Segmentation Polarity Homeobox Protein Engrailed, Segmentation Polarity Homeobox Protein Engrailed;
Chain: C
Engineered: Yes
Mutation: Yes
Other_details: The Fusion Protein Of Ehd (Unp Residues 453- Linkers Ggggg, Ehd (Unp Residues 453-512)
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: En, Cg9015
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.798 61.437 39.976 90.00 106.45 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (6m3d.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 6M3D
  • CSU: Contacts of Structural Units for 6M3D
  • Structure Factors (1032 Kb)
  • Retrieve 6M3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M3D from S2C, [Save to disk]
    • View 6M3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6M3D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m3d_A] [6m3d_B] [6m3d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6M3D
  • Community annotation for 6M3D at PDBWiki (http://pdbwiki.org)

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