6M7T Transferase Dna date Aug 21, 2018
title Human Dna Polymerase Eta In A Non-Productive Ternary Complex And Dttp Oppositing Cda
authors P.Weng, Y.Gao, W.Yang
compound source
Molecule: Dna Polymerase Eta
Chain: A
Fragment: Residues 1-432
Synonym: Rad30 Homolog A,Xeroderma Pigmentosum Variant Type
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh, Rad30, Rad30a, Xpv
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apgptpgptpgpapg)-3')
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Aptp(02i)Pcptpcpapcpapcpt)-3
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.650 80.930 140.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 02I, CA, EDO, GOL, NI, TTP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution., Weng PJ, Gao Y, Gregory MT, Wang P, Wang Y, Yang W, Proc Natl Acad Sci U S A. 2018 Oct 1. pii: 1812856115. doi:, 10.1073/pnas.1812856115. PMID:30275308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (6m7t.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 6M7T
  • CSU: Contacts of Structural Units for 6M7T
  • Structure Factors (482 Kb)
  • Retrieve 6M7T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M7T from S2C, [Save to disk]
  • View 6M7T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M7T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6m7t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m7t_T] [6m7t_P] [6m7t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M7T
  • Community annotation for 6M7T at PDBWiki (http://pdbwiki.org)

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