6M88 Transferase Transferase Inhibitor date Aug 21, 2018
title Crystal Structure Of The Core Catalytic Domain Of Human Inos Phosphate Multikinase In Complex With Myricetin
authors H.Wang, S.B.Shears
compound source
Molecule: Inositol Polyphosphate Multikinase,Inositol Polyp Multikinase;
Chain: A
Synonym: Inositol 1,3,4,6-Tetrakisphosphate 5-Kinase,Inosit 6-Tetrakisphosphate 5-Kinase;
Ec: 2.7.1.151,2.7.1.151
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ipmk, Impk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.173 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.717 77.717 84.465 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MYC enzyme Transferase E.C.2.7.1.151 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of Inositol Polyphosphate Kinases by Quercetin and Related Flavonoids: A Structure-Activity Analysis., Gu C, Stashko MA, Puhl-Rubio AC, Chakraborty M, Chakraborty A, Frye SV, Pearce KH, Wang X, Shears SB, Wang H, J Med Chem. 2019 Feb 14;62(3):1443-1454. doi: 10.1021/acs.jmedchem.8b01593. Epub , 2019 Jan 25. PMID:30624931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6m88.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6M88
  • CSU: Contacts of Structural Units for 6M88
  • Structure Factors (575 Kb)
  • Retrieve 6M88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M88 from S2C, [Save to disk]
    • View 6M88 in 3D
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    • Visual 3D analysis of 6M88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m88_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6M88
  • Community annotation for 6M88 at PDBWiki (http://pdbwiki.org)

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