6M90 Ligase date Aug 22, 2018
title Monophosphorylated Pser33 B-Catenin Peptide, B-Trcpskp1, Nr Ternary Complex
authors K.R.Simonetta, M.C.Clifton, R.L.Walter, G.M.Ranieri, J.J.Carter
compound source
Molecule: F-Boxwd Repeat-Containing Protein 1a
Chain: A
Synonym: E3rsikappab,Epididymis Tissue Protein Li 2a,F-Box Repeats Protein Beta-Trcp,Pikappabalpha-E3 Receptor Subunit
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btrc, Btrcp, Fbw1a, Fbxw1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Skp1
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Catenin Beta-1
Chain: C
Synonym: Beta-Catenin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.178 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.760 82.760 111.820 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand J91, PO4, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceProspective discovery of small molecule enhancers of an E3 ligase-substrate interaction., Simonetta KR, Taygerly J, Boyle K, Basham SE, Padovani C, Lou Y, Cummins TJ, Yung SL, von Soly SK, Kayser F, Kuriyan J, Rape M, Cardozo M, Gallop MA, Bence NF, Barsanti PA, Saha A, Nat Commun. 2019 Mar 29;10(1):1402. doi: 10.1038/s41467-019-09358-9. PMID:30926793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (6m90.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 6M90
  • CSU: Contacts of Structural Units for 6M90
  • Structure Factors (479 Kb)
  • Retrieve 6M90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M90 from S2C, [Save to disk]
  • View 6M90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M90
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m90_B] [6m90_A] [6m90_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M90
  • Community annotation for 6M90 at PDBWiki (http://pdbwiki.org)

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