6MFQ Hydrolase date Sep 11, 2018
title Crystal Structure Of A Pms2 Variant
authors B.M.D'Arcy, A.Prakash
compound source
Molecule: Mismatch Repair Endonuclease Pms2
Chain: A, B
Synonym: Dna Mismatch Repair Protein Pms2,Pms1 Protein Homo
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: G207e
Gene: Pms2, Pmsl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2 (De3 Plyss)
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.989 74.962 134.399 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical and structural characterization of two variants of uncertain significance in the PMS2 gene., D'Arcy BM, Blount J, Prakash A, Hum Mutat. 2019 Apr;40(4):458-471. doi: 10.1002/humu.23708. Epub 2019 Jan 30. PMID:30653781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (6mfq.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (6mfq.pdb2.gz) 47 Kb
  • CSU: Contacts of Structural Units for 6MFQ
  • Structure Factors (221 Kb)
  • Retrieve 6MFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MFQ from S2C, [Save to disk]
  • View 6MFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MFQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mfq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mfq_B] [6mfq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MFQ
  • Community annotation for 6MFQ at PDBWiki (http://pdbwiki.org)

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