6MGA Cell Adhesion date Sep 13, 2018
title Crystal Structure Of Human Protocadherin-1 Ec1-4 With Glycos
authors D.Modak, M.Sotomayor
compound source
Molecule: Protocadherin-1
Chain: A
Synonym: Cadherin-Like Protein 1,Protocadherin-42,Pc42
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcdh1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi 293f
Expression_system_vector_type: Plasmid
symmetry Space Group: P 61 2 2
R_factor 0.215 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
147.227 147.227 149.366 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand CA, MAN, NAG enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (6mga.pdb1.gz) 280 Kb
  • Biological Unit Coordinates (6mga.pdb2.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 6MGA
  • CSU: Contacts of Structural Units for 6MGA
  • Structure Factors (199 Kb)
  • Retrieve 6MGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MGA from S2C, [Save to disk]
  • View 6MGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MGA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mga from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mga_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MGA
  • Community annotation for 6MGA at PDBWiki (http://pdbwiki.org)

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