6ML7 Transcription Dna date Sep 26, 2018
title Zbtb24 Zinc Fingers 4-8 With 19+1mer Dna Oligonucleotide (Se With A Cpg 5mc Modification)
authors J.R.Horton, X.Cheng, R.Ren
compound source
Molecule: Zinc Finger And Btb Domain-Containing Protein 24
Chain: A
Fragment: Zinc Fingers 4-8 (Unp Residues 375-519)
Synonym: Bone Morphogenetic Protein-Induced Factor 1, Brain Protein 1, Zinc Finger Protein 450;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Zbtb24, Bif1, Bsg1, Znf450
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Apcpgpcpapgpgptpcpcptpgpgp Pgpapaptpt)-3');
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Dna (5'- D(Tpapaptptpcpgptpcpcpapgpgpapcpcptpgpcp
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.130 68.707 48.448 90.00 92.58 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand 5CM, EDO, PEG, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6ml7.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 6ML7
  • CSU: Contacts of Structural Units for 6ML7
  • Structure Factors (761 Kb)
  • Retrieve 6ML7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ML7 from S2C, [Save to disk]
    • View 6ML7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ML7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ml7_F] [6ml7_E] [6ml7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ML7
  • Community annotation for 6ML7 at PDBWiki (http://pdbwiki.org)

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