6MQU De Novo Protein date Oct 10, 2018
title Pl5, Synthetic Transmembrane Domain Variant Of Human Phospho
authors M.Mravic, J.L.Thomaston, W.F.Degrado
compound source
Molecule: Pl5, Designed Tm Pentamer
Chain: A, B, C, D, E, F, G, H, I, J
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 41
R_factor 0.228 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.230 124.230 51.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.17 Å
Primary referencePacking of apolar side chains enables accurate design of highly stable membrane proteins., Mravic M, Thomaston JL, Tucker M, Solomon PE, Liu L, DeGrado WF, Science. 2019 Mar 29;363(6434):1418-1423. doi: 10.1126/science.aav7541. PMID:30923216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (6mqu.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (6mqu.pdb2.gz) 23 Kb
  • CSU: Contacts of Structural Units for 6MQU
  • Structure Factors (192 Kb)
  • Retrieve 6MQU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MQU from S2C, [Save to disk]
    • View 6MQU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MQU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mqu_J] [6mqu_D] [6mqu_C] [6mqu_I] [6mqu_E] [6mqu_A] [6mqu_H] [6mqu_B] [6mqu_G] [6mqu_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MQU
  • Community annotation for 6MQU at PDBWiki (http://pdbwiki.org)

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