6MR2 Transferase date Oct 11, 2018
title E. Coli Cysteine Desulfurase Sufs With A Cysteine Persulfide Intermediate
authors J.A.Dunkle, P.A.Frantom
compound source
Molecule: Cysteine Desulfurase
Chain: A
Synonym: Selenocysteine Beta-Lyase, Scl, Selenocysteine Lya Selenocysteine Reductase;
Ec: 2.8.1.7,4.4.1.16
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Sufs, Csdb, Ynhb, B1680, Jw1670
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 43 21 2
R_factor 0.168 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.036 127.036 134.499 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CSS, PLP enzyme Transferase E.C.2.8.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural evidence for dimer-interface driven regulation of the type II cysteine desulfurase, SufS., Dunkle JA, Bruno M, Outten FW, Frantom PA, Biochemistry. 2018 Dec 20. doi: 10.1021/acs.biochem.8b01122. PMID:30571100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (6mr2.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 6MR2
  • CSU: Contacts of Structural Units for 6MR2
  • Structure Factors (610 Kb)
  • Retrieve 6MR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MR2 from S2C, [Save to disk]
  • View 6MR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MR2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mr2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MR2
  • Community annotation for 6MR2 at PDBWiki (http://pdbwiki.org)

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