6MRJ Dna Binding Protein Dna date Oct 13, 2018
title Crystal Structure Of H.Pylori Nikr In Complex With Dna
authors E.Pozharski, V.De Serrano
compound source
Molecule: Nickel-Responsive Regulator
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Helicobacter Pylori (Strain Atcc 70039 26695);
Organism_taxid: 85962
Strain: Atcc 700392 26695
Gene: Hp_1338
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (36-Mer)
Chain: L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (36-Mer)
Chain: M
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.370 94.180 204.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MG, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (6mrj.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 6MRJ
  • CSU: Contacts of Structural Units for 6MRJ
  • Structure Factors (1186 Kb)
  • Retrieve 6MRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MRJ from S2C, [Save to disk]
    • View 6MRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MRJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mrj_L] [6mrj_B] [6mrj_M] [6mrj_D] [6mrj_A] [6mrj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MRJ
  • Community annotation for 6MRJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science