6MS4 Translation date Oct 16, 2018
title Crystal Structure Of The Denr-Mct-1 Complex
authors I.B.Lomakin, T.A.Steitz, S.E.Dmitriev
compound source
Molecule: Malignant T-Cell-Amplified Sequence 1
Chain: A
Synonym: Mct-1,Multiple Copies T-Cell Malignancies
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcts1, Mct1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star

Molecule: Density-Regulated Protein
Chain: B
Synonym: Drp,Protein Drp1,Smooth Muscle Cell-Associated Pro Smap-3;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Denr, Drp1, H14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
symmetry Space Group: P 41 21 2
R_factor 0.231 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.810 67.810 124.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation., Lomakin IB, Dmitriev SE, Steitz TA, Proc Natl Acad Sci U S A. 2018 Dec 24. pii: 1809688116. doi:, 10.1073/pnas.1809688116. PMID:30584092
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (6ms4.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 6MS4
  • Structure Factors (314 Kb)
  • Retrieve 6MS4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MS4 from S2C, [Save to disk]
  • View 6MS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MS4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ms4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ms4_B] [6ms4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MS4
  • Community annotation for 6MS4 at PDBWiki (http://pdbwiki.org)

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