6MXO Nuclear Protein Dna date Oct 31, 2018
title Structure Of Hpoleta Incorporating Dctp Opposite The 3-Prime Gg
authors H.Ouzon-Shubeita, S.Lee
compound source
Molecule: Dna Polymerase Eta
Chain: A
Synonym: Rad30 Homolog A,Xeroderma Pigmentosum Variant Type
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh, Rad30, Rad30a, Xpv
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apcpgpgpcptpcpapcpapcpt)-3'
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Tpapgptpgptpgpapg)-3')
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61
R_factor 0.175 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.560 98.560 81.713 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand 0KX, 9RD, GOL, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the bypass of the major oxaliplatin-DNA adducts by human DNA polymerase eta., Ouzon-Shubeita H, Baker M, Koag MC, Lee S, Biochem J. 2019 Feb 1. pii: BCJ20180848. doi: 10.1042/BCJ20180848. PMID:30709915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (6mxo.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 6MXO
  • CSU: Contacts of Structural Units for 6MXO
  • Structure Factors (804 Kb)
  • Retrieve 6MXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MXO from S2C, [Save to disk]
  • View 6MXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MXO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mxo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mxo_P] [6mxo_T] [6mxo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MXO
  • Community annotation for 6MXO at PDBWiki (http://pdbwiki.org)

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