6MYC Fluorescent Protein date Nov 01, 2018
title Room-Temperature Structure Of Deuterated Tetdron (Isomorph 2
authors S.Dajnowicz, A.Kovalevsky
compound source
Molecule: Photoswitchable Protein Tetdron
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Organism_scientific: Echinophyllia Sp. Sc22
Organism_taxid: 301887
Gene: Dronpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.153 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.988 138.075 115.804 90.00 104.49 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GYC enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (6myc.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (6myc.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb4.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb5.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb6.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb7.gz) 38 Kb
  • Biological Unit Coordinates (6myc.pdb8.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 6MYC
  • CSU: Contacts of Structural Units for 6MYC
  • Structure Factors (1045 Kb)
  • Retrieve 6MYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MYC from S2C, [Save to disk]
    • View 6MYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6myc_D] [6myc_A] [6myc_C] [6myc_B] [6myc_H] [6myc_G] [6myc_F] [6myc_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MYC
  • Community annotation for 6MYC at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science