6MYE Cell Adhesion date Nov 01, 2018
title Crystal Structure Of Human Scribble Pdz1 Domain In Complex W Internal Pdz Binding Motif Of Src Homology 3 Domain-Contain Guanine Nucleotide Exchange Factor (Sgef)
authors Y.J.Sun, T.Hou, L.Gakhar, E.J.Fuentes
compound source
Molecule: Protein Scribble Homolog
Chain: A
Synonym: Hscrib,Protein Lap4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scrib, Crib1, Kiaa0147, Lap4, Scrb1, Vartul
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rho Guanine Nucleotide Exchange Factor 26, Peptid
Chain: B
Synonym: Sh3 Domain-Containing Guanine Exchange Factor
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.198 R_Free 0.205
length a length b length c angle alpha angle beta angle gamma
67.890 67.890 44.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6mye.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 6MYE
  • Structure Factors (1644 Kb)
  • Retrieve 6MYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MYE from S2C, [Save to disk]
  • View 6MYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MYE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mye from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mye_A] [6mye_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MYE
  • Community annotation for 6MYE at PDBWiki (http://pdbwiki.org)

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