6MZC Transcription date Nov 05, 2018
title Human Tfiid Bc Core
authors A.B.Patel, R.K.Louder, B.J.Greber, S.Grunberg, J.Luo, J.Fang, Y.Li J.Ranish, S.Hahn, E.Nogales
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 2
Chain: B
Synonym: 150 Kda Cofactor Of Initiator Function,Rna Polymer Tbp-Associated Factor Subunit B,Tbp-Associated Factor 150 K
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 4
Chain: E
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit C, Associated Factor 4,Transcription Initiation Factor Tfiid 1 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 5
Chain: G
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100,Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: H
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Tafii7 Transcription Initiation Factor Tfiid 80 Kda Subunit,Tafii8

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: I
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Tafii7 Transcription Initiation Factor Tfiid 80 Kda Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 8
Chain: K
Synonym: Protein Taube Nuss,Tbp-Associated Factor 43 Kda

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 9
Chain: M
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii3 Transcription Initiation Factor Tfiid 32 Kda Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: O
Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Tafii30;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 12
Chain: R
Synonym: Transcription Initiation Factor Tfiid 2015 Kda Su Tafii20tafii15;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Poly(Unk)
Chain: Z

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
Gene
Ontology
ChainFunctionProcessComponent
B


E


G


H, I


K


M
  • p53 binding
  • protein stabilization

  • O

  • transcription factor TFIID c...
  • R
  • transcription coactivator ac...


  • Primary referenceStructure of human TFIID and mechanism of TBP loading onto promoter DNA., Patel AB, Louder RK, Greber BJ, Grunberg S, Luo J, Fang J, Liu Y, Ranish J, Hahn S, Nogales E, Science. 2018 Nov 15. pii: science.aau8872. doi: 10.1126/science.aau8872. PMID:30442764
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (407 Kb) [Save to disk]
  • Biological Unit Coordinates (6mzc.pdb1.gz) 388 Kb
  • CSU: Contacts of Structural Units for 6MZC
  • Retrieve 6MZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MZC from S2C, [Save to disk]
  • View 6MZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MZC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mzc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mzc_I] [6mzc_G] [6mzc_Z] [6mzc_B] [6mzc_M] [6mzc_H] [6mzc_R] [6mzc_K] [6mzc_E] [6mzc_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MZC
  • Community annotation for 6MZC at PDBWiki (http://pdbwiki.org)

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