6MZD Transcription date Nov 05, 2018
title Human Tfiid Lobe A Canonical
authors A.B.Patel, R.K.Louder, B.J.Greber, S.Grunberg, J.Luo, J.Fang, Y.Li J.Ranish, S.Hahn, E.Nogales
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 1
Chain: A
Synonym: Cell Cycle Gene 1 Protein,Tbp-Associated Factor 25 P250,Transcription Initiation Factor Tfiid 250 Kda Subunit,
Ec: 2.3.1.48,2.7.11.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 3
Chain: C
Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Tafii140;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 4
Chain: D
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit C, Associated Factor 4,Transcription Initiation Factor Tfiid 1 Subunit,Tafii130,Transcription Initiation Factor Tfiid 135 Subunit,Tafii135;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 5
Chain: F
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: H
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Tafii7 Transcription Initiation Factor Tfiid 80 Kda Subunit,Tafii8

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 9
Chain: L
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii3 Transcription Initiation Factor Tfiid 32 Kda Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: N
Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Tafii30;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 11
Chain: P
Synonym: Tfiid Subunit P30-Beta,Transcription Initiation Fa 28 Kda Subunit,Tafii28;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 12
Chain: Q
Synonym: Transcription Initiation Factor Tfiid 2015 Kda Su Tafii20tafii15;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 13
Chain: S
Synonym: Transcription Initiation Factor Tfiid 18 Kda Subun Tafii18;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tata-Box-Binding Protein
Chain: T
Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Poly(Unk)
Chain: Y

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.80 Å
ligand
enzyme Transferase E.C.2.3.1.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone acetyltransferase ac...
  • positive regulation of prote...

  • C


    D


    F


    H


    L
  • p53 binding
  • protein stabilization

  • N

  • transcription factor TFIID c...
  • P
  • transcription coactivator ac...

  • transcription factor TFIID c...
  • Q
  • transcription coactivator ac...


  • S

  • transcription factor TFIID c...
  • T

  • transcription factor TFIID c...
  • Primary referenceStructure of human TFIID and mechanism of TBP loading onto promoter DNA., Patel AB, Louder RK, Greber BJ, Grunberg S, Luo J, Fang J, Liu Y, Ranish J, Hahn S, Nogales E, Science. 2018 Nov 15. pii: science.aau8872. doi: 10.1126/science.aau8872. PMID:30442764
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk]
  • Biological Unit Coordinates (6mzd.pdb1.gz) 198 Kb
  • CSU: Contacts of Structural Units for 6MZD
  • Retrieve 6MZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MZD from S2C, [Save to disk]
  • View 6MZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mzd_Q] [6mzd_A] [6mzd_H] [6mzd_Y] [6mzd_D] [6mzd_T] [6mzd_L] [6mzd_P] [6mzd_C] [6mzd_S] [6mzd_N] [6mzd_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MZD
  • Community annotation for 6MZD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science