6MZM Transcription Dna date Nov 05, 2018
title Human Tfiid Bound To Promoter Dna And Tfiia
authors A.B.Patel, R.K.Louder, B.J.Greber, S.Grunberg, J.Luo, J.Fang, Y.Li J.Ranish, S.Hahn, E.Nogales
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 1,
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 2,
Chain: B
Synonym: 150 Kda Cofactor Of Initiator Function

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 4,
Chain: D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 5,T
Chain: G
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: H
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: I
Synonym: Transcription Initiation Factor Tfiid 70 Kda Subun

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 7
Chain: J
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit F, Transcription Initiation Factor Tfiid 55 Kda Subunit,Tafii5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 8,
Chain: K
Synonym: Protein Taube Nuss,Tbp-Associated Factor 43 Kda,Tb Associated Factor 8,Transcription Initiation Factor Tfiid 4 Subunit,Htafii43,Protein Taube Nuss,Tbp-Associated Factor 4 Associated Factor 8;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 9,
Chain: L
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii3 Transcription Initiation Factor Tfiid 32 Kda Subunit,Tafii3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: O
Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Tafii30;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 12
Chain: R
Synonym: Transcription Initiation Factor Tfiid 2015 Kda Su Tafii20tafii15;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tata-Box-Binding Protein
Chain: T
Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Scp Dna (80-Mer)
Chain: U
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Scp Dna (80-Mer)
Chain: V
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Iia Subunit 1
Chain: W
Synonym: General Transcription Factor Iia Subunit 1,Tfiial, Transcription Initiation Factor Tfiia 42 Kda Subunit,Tfiia-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2a1, Tf2a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Initiation Factor Iia Subunit 2
Chain: X
Synonym: General Transcription Factor Iia Subunit 2,Tfiia P Subunit,Tfiias,Transcription Initiation Factor Iia Gamma Ch Gamma;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2a2, Tf2a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Unk
Chain: Z

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.50 Å
Gene
Ontology
ChainFunctionProcessComponent
B


D


G


H, I


J


K


L
  • p53 binding
  • protein stabilization

  • O

  • transcription factor TFIID c...
  • R
  • transcription coactivator ac...


  • T

  • transcription factor TFIID c...
  • W


    X


    Primary referenceStructure of human TFIID and mechanism of TBP loading onto promoter DNA., Patel AB, Louder RK, Greber BJ, Grunberg S, Luo J, Fang J, Liu Y, Ranish J, Hahn S, Nogales E, Science. 2018 Nov 15. pii: science.aau8872. doi: 10.1126/science.aau8872. PMID:30442764
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (575 Kb) [Save to disk]
  • Biological Unit Coordinates (6mzm.pdb1.gz) 554 Kb
  • CSU: Contacts of Structural Units for 6MZM
  • Retrieve 6MZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MZM from S2C, [Save to disk]
  • View 6MZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MZM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mzm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mzm_I] [6mzm_K] [6mzm_V] [6mzm_D] [6mzm_Z] [6mzm_O] [6mzm_A] [6mzm_U] [6mzm_R] [6mzm_H] [6mzm_L] [6mzm_T] [6mzm_W] [6mzm_B] [6mzm_X] [6mzm_G] [6mzm_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MZM
  • Community annotation for 6MZM at PDBWiki (http://pdbwiki.org)

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