6N61 Transferase Dna date Nov 24, 2018
title Escherichia Coli Rna Polymerase Sigma70-Holoenzyme Bound To Fork Promoter Dna And Capistruin
authors N.Braffman, J.Hauver, E.A.Campbell, S.A.Darst
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Fragment: N-Terminal Domain (Unp Residues 1-234)
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpob, Gron, Nitb, Rif, Ron, Stl, Stv, Tabd, B3987, Jw
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: F
Synonym: Sigma-70
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpod
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Non-Template Strand Dna
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Template Strand Dna
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Capistruin
Chain: I
Fragment: Unp Residues 29-47
Engineered: Yes

Organism_scientific: Burkholderia Thailandensis (Strain Atc Dsm 13276 Cip 106301 E264);
Organism_taxid: 271848
Strain: Atcc 700388 Dsm 13276 Cip 106301 E264
Gene: Dr63_3338
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.273 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.888 172.888 385.015 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.25 Å
ligand EDO, EPE, MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]
  • Biological Unit Coordinates (6n61.pdb1.gz) 585 Kb
  • LPC: Ligand-Protein Contacts for 6N61
  • CSU: Contacts of Structural Units for 6N61
  • Structure Factors (2084 Kb)
  • Retrieve 6N61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6N61 from S2C, [Save to disk]
  • View 6N61 in 3D
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  • Visual 3D analysis of 6N61
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  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6n61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6n61_B] [6n61_F] [6n61_E] [6n61_I] [6n61_A] [6n61_C] [6n61_N] [6n61_D] [6n61_T]
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