6N9O Immune System date Dec 03, 2018
title Crystal Structure Of Human Gsdmd
authors Z.Liu, C.Wang, J.Yang, T.S.Xiao
compound source
Molecule: Gasdermin-D
Chain: A, B, C, D
Synonym: Gasdermin Domain-Containing Protein 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsdmd, Dfna5l, Gsdmdc1, Fksg10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.276 R_Free 0.345
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.640 105.550 151.790 90.00 94.47 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal Structures of the Full-Length Murine and Human Gasdermin D Reveal Mechanisms of Autoinhibition, Lipid Binding, and Oligomerization., Liu Z, Wang C, Yang J, Zhou B, Yang R, Ramachandran R, Abbott DW, Xiao TS, Immunity. 2019 May 8. pii: S1074-7613(19)30197-9. doi:, 10.1016/j.immuni.2019.04.017. PMID:31097341
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (508 Kb) [Save to disk]
  • Biological Unit Coordinates (6n9o.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (6n9o.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (6n9o.pdb3.gz) 128 Kb
  • Biological Unit Coordinates (6n9o.pdb4.gz) 128 Kb
  • CSU: Contacts of Structural Units for 6N9O
  • Structure Factors (383 Kb)
  • Retrieve 6N9O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6N9O from S2C, [Save to disk]
    • View 6N9O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6N9O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6n9o_D] [6n9o_A] [6n9o_C] [6n9o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6N9O
  • Community annotation for 6N9O at PDBWiki (http://pdbwiki.org)

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