6NCE Dna Binding Protein Dna date Dec 11, 2018
title Crystal Structure Of The Human Foxn3 Dna Binding Domain In C With A Forkhead Dna Sequence
authors J.M.Rogers, S.M.Jarrett, T.C.Seegar, C.T.Waters, A.N.Hallworth, S.C.Blacklow, M.L.Bulyk
compound source
Molecule: Forkhead Box Protein N3
Chain: A
Synonym: Checkpoint Suppressor 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxn3, C14orf116, Ches1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Tpcptptpapapgptpapapapcpap 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Apcpaptptpgptptptpapcptptp 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.940 102.080 34.450 90.00 102.65 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes., Rogers JM, Waters CT, Seegar TCM, Jarrett SM, Hallworth AN, Blacklow SC, Bulyk ML, Mol Cell. 2019 Feb 22. pii: S1097-2765(19)30039-5. doi:, 10.1016/j.molcel.2019.01.019. PMID:30826165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (6nce.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 6NCE
  • CSU: Contacts of Structural Units for 6NCE
  • Structure Factors (281 Kb)
  • Retrieve 6NCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NCE from S2C, [Save to disk]
  • View 6NCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NCE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nce_A] [6nce_C] [6nce_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NCE
  • Community annotation for 6NCE at PDBWiki (http://pdbwiki.org)

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