6NCM Dna Binding Protein Dna date Dec 11, 2018
title Crystal Structure Of The Human Foxn3 Dna Binding Domain In C With A Forkhead-Like (Fhl) Dna Sequence
authors J.M.Rogers, S.M.Jarrett, T.C.Seegar, C.T.Waters, A.N.Hallworth, S.C.Blacklow, M.L.Bulyk
compound source
Molecule: Forkhead Box Protein N3
Chain: A, B
Synonym: Checkpoint Suppressor 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxn3, C14orf116, Ches1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Aptpapgpcpgptpcptptpapgpcp 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpcpaptpgpcptpapapgpapcpgp 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.276
length a length b length c angle alpha angle beta angle gamma
42.540 72.310 102.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MG enzyme
A, B

Primary referenceBispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes., Rogers JM, Waters CT, Seegar TCM, Jarrett SM, Hallworth AN, Blacklow SC, Bulyk ML, Mol Cell. 2019 Feb 22. pii: S1097-2765(19)30039-5. doi:, 10.1016/j.molcel.2019.01.019. PMID:30826165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (6ncm.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 6NCM
  • CSU: Contacts of Structural Units for 6NCM
  • Structure Factors (255 Kb)
  • Retrieve 6NCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NCM from S2C, [Save to disk]
  • View 6NCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NCM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ncm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ncm_A] [6ncm_C] [6ncm_D] [6ncm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NCM
  • Community annotation for 6NCM at PDBWiki (http://pdbwiki.org)

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