6NE3 Dna Binding Protein Dna date Dec 16, 2018
title Cryo-Em Structure Of Singly-Bound Snf2h-Nucleosome Complex W Bound At Shl-2
authors J.P.Armache, N.Gamarra, S.L.Johnson, J.D.Leonard, S.Wu, G.N.Narl Y.Cheng
compound source
Molecule: Histone H3.2
Chain: A, E
Synonym: Histone H3
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: C, G
Engineered: Yes
Mutation: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18032686mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18032686mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (156-Mer)
Chain: J
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (156-Mer)
Chain: I
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily A Member 5;
Chain: W
Synonym: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin A5,Sucrose Nonfermenting Protein 2 Homolog,Hsn
Ec: 3.6.4.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarca5, Snf2h, Wcrf135
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ADP enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


W


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (6ne3.pdb1.gz) 290 Kb
  • LPC: Ligand-Protein Contacts for 6NE3
  • CSU: Contacts of Structural Units for 6NE3
  • Retrieve 6NE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NE3 from S2C, [Save to disk]
  • View 6NE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NE3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ne3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ne3_G] [6ne3_C] [6ne3_F] [6ne3_I] [6ne3_A] [6ne3_W] [6ne3_H] [6ne3_J] [6ne3_E] [6ne3_B] [6ne3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NE3
  • Community annotation for 6NE3 at PDBWiki (http://pdbwiki.org)

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