6NFY Transferase date Dec 21, 2018
title Crystal Structure Of Nonphosphorylated, Hpk1 Kinase Domain I With Sunitinib In The Inactive State.
authors E.Johnson, M.Mctigue, C.N.Cronin
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Synonym: Hematopoietic Progenitor Kinase,Mapkerk Kinase Ki Kinase 1,Mekkk 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map4k1, Hpk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: H 3 2
R_factor 0.192 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
165.908 165.908 163.583 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.17 Å
enzyme Transferase E.C. BRENDA
A, B

Primary referenceMultiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation., Johnson E, McTigue M, Gallego RA, Johnson TW, Timofeevski S, Maestre M, Fisher TS, Kania R, Sawasdikosol S, Burakoff S, Cronin CN, J Biol Chem. 2019 Apr 24. pii: AC119.007466. doi: 10.1074/jbc.AC119.007466. PMID:31018963
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (6nfy.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 6NFY
  • Structure Factors (2132 Kb)
  • Retrieve 6NFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NFY from S2C, [Save to disk]
  • View 6NFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NFY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nfy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nfy_B] [6nfy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NFY
  • Community annotation for 6NFY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science