6NG0 Transferase date Dec 21, 2018
title Crystal Structure Of Hpk1 Kinase Domain T165e,S171e Phosphom Mutant In Complex With Sunitinib In The Inactive State.
authors E.Johnson, M.Mctigue, C.N.Cronin
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Synonym: Hematopoietic Progenitor Kinase,Mapkerk Kinase Ki Kinase 1,Mekkk 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map4k1, Hpk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1
R_factor 0.201 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.810 58.920 60.930 82.44 82.31 64.34
method X-Ray Diffractionresolution 2.05 Å
ligand B49 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMultiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation., Johnson E, McTigue M, Gallego RA, Johnson TW, Timofeevski S, Maestre M, Fisher TS, Kania R, Sawasdikosol S, Burakoff S, Cronin CN, J Biol Chem. 2019 Apr 24. pii: AC119.007466. doi: 10.1074/jbc.AC119.007466. PMID:31018963
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6ng0.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 6NG0
  • CSU: Contacts of Structural Units for 6NG0
  • Structure Factors (3272 Kb)
  • Retrieve 6NG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NG0 from S2C, [Save to disk]
  • View 6NG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NG0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ng0_A] [6ng0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NG0
  • Community annotation for 6NG0 at PDBWiki (http://pdbwiki.org)

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