6NGG Immune System date Dec 21, 2018
title Crystal Structure Of Human Cd160 V58m Mutant
authors W.Liu, J.Bonanno, S.C.Almo
compound source
Molecule: Cd160 Antigen
Chain: A, B
Synonym: Natural Killer Cell Receptor By55
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd160, By55
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Pppb1gap_s;
Expression_system_taxid: 1182034
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.662 54.060 92.604 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (6ngg.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (6ngg.pdb2.gz) 17 Kb
  • CSU: Contacts of Structural Units for 6NGG
  • Structure Factors (461 Kb)
  • Retrieve 6NGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NGG from S2C, [Save to disk]
  • View 6NGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NGG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ngg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ngg_B] [6ngg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NGG
  • Community annotation for 6NGG at PDBWiki (http://pdbwiki.org)

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