6NHG Oxidoreductase date Dec 21, 2018
title Rhodobacter Sphaeroides Mitochondrial Respiratory Chain Comp
authors D.Xia, F.Zhou, L.Esser
compound source
Molecule: Cytochrome B-C1 Complex Subunit 1, Mitochondrial
Chain: A
Synonym: Complex III Subunit 1,Core Protein I,Ubiquinol-Cyt Reductase Complex Core Protein 1;
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial
Chain: B
Synonym: Complex III Subunit 2,Core Protein II,Ubiquinol-Cy Reductase Complex Core Protein 2;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B
Chain: C
Synonym: Complex III Subunit 3,Complex III Subunit III,Cyto C1 Complex Subunit 3,Ubiquinol-Cytochrome-C Reductase Compl Cytochrome B Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C1, Heme Protein, Mitochondrial
Chain: D
Synonym: Complex III Subunit 4,Complex III Subunit Iv,Cytoc Complex Subunit 4,Ubiquinol-Cytochrome-C Reductase Complex C1 Subunit,Cytochrome C-1;
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cyc1
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E
Synonym: Complex III Subunit 5,Cytochrome B-C1 Complex Subu Rieske Iron-Sulfur Protein,Risp,Ubiquinol-Cytochrome C Redu Iron-Sulfur Subunit;
Ec: 1.10.2.2
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 7
Chain: F
Synonym: Complex III Subunit 7,Complex III Subunit Vii,Qp-C Ubiquinol-Cytochrome C Reductase Complex 14 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 8
Chain: G
Synonym: Complex III Subunit 8,Complex III Subunit Viii,Ubi Cytochrome C Reductase Complex 9.5 Kda Protein,Ubiquinol-Cy Reductase Complex Ubiquinone-Binding Protein Qp-C;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 6, Mitochondrial
Chain: H
Synonym: Complex III Subunit 6,Complex III Subunit Viii,Cyt Non-Heme 11 Kda Protein,Mitochondrial Hinge Protein,Ubiquin Cytochrome C Reductase Complex 11 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: I
Synonym: Complex III Subunit 5,Cytochrome B-C1 Complex Subu Rieske Iron-Sulfur Protein,Risp,Rieske Protein Uqcrfs1,Ubiq Cytochrome C Reductase Iron-Sulfur Subunit;
Ec: 1.10.2.2
Engineered: Yes
Other_details: Amino Terminal Signal Peptide Of Mitiochondr Rieske Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Uqcrfs1
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 9
Chain: J
Synonym: Complex III Subunit 9,Complex III Subunit X,Cytoch Non-Heme 7 Kda Protein,Ubiquinol-Cytochrome C Reductase Com Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 10
Chain: K
Synonym: Complex III Subunit 10,Complex III Subunit Xi,Ubiq Cytochrome C Reductase Complex 6.4 Kda Protein
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: I 41 2 2
R_factor 0.251 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.181 154.181 598.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 6PE, 8PE, AZO, CDL, FES, HEC, HEM, MC3 enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K
  • ubiquinol-cytochrome-c reduc...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1041 Kb) [Save to disk]
  • Biological Unit Coordinates (6nhg.pdb1.gz) 2040 Kb
  • LPC: Ligand-Protein Contacts for 6NHG
  • CSU: Contacts of Structural Units for 6NHG
  • Structure Factors (1099 Kb)
  • Retrieve 6NHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NHG from S2C, [Save to disk]
    • View 6NHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NHG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nhg_D] [6nhg_E] [6nhg_G] [6nhg_C] [6nhg_J] [6nhg_F] [6nhg_B] [6nhg_A] [6nhg_K] [6nhg_I] [6nhg_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NHG
  • Community annotation for 6NHG at PDBWiki (http://pdbwiki.org)

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