6NHY Immune System date Dec 24, 2018
title Structure Of The Transmembrane Domain Of The Death Receptor (G217y) - Trimer Only
authors J.J.Chou, L.Pan, L.Zhao, W.Chen, A.Piai, T.Fu, H.Wu, Z.Liu
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A, B, C
Synonym: Death Receptor 5,Tnf-Related Apoptosis-Inducing Li Receptor 2,Trail-R2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf10b, Dr5, Killer, Trailr2, Trick2, Ztnfr9, Unq160pro186;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pmm-Lr6
methodSolution NMR
Primary referenceHigher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling., Pan L, Fu TM, Zhao W, Zhao L, Chen W, Qiu C, Liu W, Liu Z, Piai A, Fu Q, Chen S, Wu H, Chou JJ, Cell. 2019 Mar 7;176(6):1477-1489.e14. doi: 10.1016/j.cell.2019.02.001. Epub 2019, Feb 28. PMID:30827683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (435 Kb) [Save to disk]
  • Biological Unit Coordinates (6nhy.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 6NHY
  • Original NMR restraints for 6NHY from PDB
  • Retrieve 6NHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NHY from S2C, [Save to disk]
  • View 6NHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NHY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nhy_A] [6nhy_C] [6nhy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NHY
  • Community annotation for 6NHY at PDBWiki (http://pdbwiki.org)

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