6NIH Immune System date Dec 27, 2018
title Crystal Structure Of Human Tlr1
authors L.Su, H.Zhang
compound source
Molecule: Toll-Like Receptor 1,Variable Lymphocyte Receptor
Chain: A, B
Synonym: Tollinterleukin-1 Receptor-Like Protein,Til
Engineered: Yes
Organism_scientific: Homo Sapiens, Eptatretus Stoutii
Organism_common: Human, Pacific Hagfish
Organism_taxid: 9606, 7765
Gene: Tlr1, Kiaa0012, Vlrb
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.244 R_Free 0.274
length a length b length c angle alpha angle beta angle gamma
79.028 74.377 106.076 90.00 96.97 90.00
method X-Ray Diffractionresolution 2.30 Å
A, B

Primary referenceStructural Basis of TLR2/TLR1 Activation by the Synthetic Agonist Diprovocim., Su L, Wang Y, Wang J, Mifune Y, Morin MD, Jones BT, Moresco EMY, Boger DL, Beutler B, Zhang H, J Med Chem. 2019 Mar 28;62(6):2938-2949. doi: 10.1021/acs.jmedchem.8b01583. Epub , 2019 Mar 13. PMID:30829478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (528 Kb) [Save to disk]
  • Biological Unit Coordinates (6nih.pdb1.gz) 261 Kb
  • Biological Unit Coordinates (6nih.pdb2.gz) 260 Kb
  • CSU: Contacts of Structural Units for 6NIH
  • Structure Factors (1595 Kb)
  • Retrieve 6NIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NIH from S2C, [Save to disk]
  • View 6NIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NIH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nih from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nih_B] [6nih_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NIH
  • Community annotation for 6NIH at PDBWiki (http://pdbwiki.org)

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