6NIN Oxidoreductase Inhibitor date Dec 31, 2018
title Rhodobacter Sphaeroides Bc1 With Stigmatellin A
authors D.Xia, F.Zhou, L.Esser
compound source
Molecule: Cytochrome B
Chain: A, E, K, O, S, W
Other_details: Mutation At Ala185 To Cys
Organism_scientific: Rhodobacter Sphaeroides (Strain Atcc 1 2.4.1 Ncib 8253 Dsm 158);
Organism_taxid: 272943
Strain: Atcc 17023 2.4.1 Ncib 8253 Dsm 158

Molecule: Cytochrome C1
Chain: B, F, L, P, T, X

Organism_scientific: Rhodobacter Sphaeroides (Strain Atcc 1 2.4.1 Ncib 8253 Dsm 158);
Organism_taxid: 272943
Strain: Atcc 17023 2.4.1 Ncib 8253 Dsm 158

Molecule: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subu
Chain: C, G, M, Q, U, Y
Ec: 1.10.2.2
Mutation: Yes

Organism_scientific: Rhodobacter Sphaeroides (Strain Atcc 1 2.4.1 Ncib 8253 Dsm 158);
Organism_taxid: 272943
Strain: Atcc 17023 2.4.1 Ncib 8253 Dsm 158
symmetry Space Group: C 1 2 1
R_factor 0.249 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
356.661 145.752 162.223 90.00 104.97 90.00
method X-Ray Diffractionresolution 3.60 Å
ligand
enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, T, L, X, P, B


S, K, E, A, O, W


Y, Q, M, C, G, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2639 Kb) [Save to disk]
  • Biological Unit Coordinates (6nin.pdb1.gz) 874 Kb
  • Biological Unit Coordinates (6nin.pdb2.gz) 874 Kb
  • Biological Unit Coordinates (6nin.pdb3.gz) 879 Kb
  • CSU: Contacts of Structural Units for 6NIN
  • Structure Factors (1905 Kb)
  • Retrieve 6NIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NIN from S2C, [Save to disk]
  • View 6NIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NIN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nin from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nin_W] [6nin_M] [6nin_O] [6nin_X] [6nin_C] [6nin_Q] [6nin_U] [6nin_K] [6nin_T] [6nin_E] [6nin_L] [6nin_B] [6nin_S] [6nin_P] [6nin_G] [6nin_A] [6nin_Y] [6nin_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NIN
  • Community annotation for 6NIN at PDBWiki (http://pdbwiki.org)

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