6NJQ Dna Binding Protein Dna date Jan 04, 2019
title Structure Of Tbp-Hoogsteen Containing Dna Complex
authors M.A.Schumacher, A.Stelling
compound source
Molecule: Tata-Box-Binding Protein 1
Chain: B, A
Synonym: Attbp1,Tata Sequence-Binding Protein 1,Tbp-1,Tata- Factor 1,Tata-Box Factor 1,Transcription Initiation Factor Subunit;
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Tbp1, At3g13445, Mrp15.10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpcptpaptpapapapcpgpgpgpcp
Chain: E, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpgpcpcpcpgptptptpaptpapgp
Chain: F, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.299 57.967 149.752 90.00 96.50 90.00
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • obsolete general RNA polymer...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (6njq.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (6njq.pdb2.gz) 84 Kb
  • CSU: Contacts of Structural Units for 6NJQ
  • Structure Factors (376 Kb)
  • Retrieve 6NJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NJQ from S2C, [Save to disk]
    • View 6NJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NJQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6njq_F] [6njq_E] [6njq_C] [6njq_B] [6njq_D] [6njq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NJQ
  • Community annotation for 6NJQ at PDBWiki (http://pdbwiki.org)

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