6NRD Chaperone date Jan 23, 2019
title Htric-Hpfd Class4
authors D.R.Gestaut, S.H.Roh, B.Ma, G.Pintilie, L.A.Joachimiak, A.Leitner T.Walzthoeni, R.Aebersold, W.Chiu, J.Frydman
compound source
Molecule: T-Complex Protein 1 Subunit Alpha
Chain: A, I
Synonym: Tcp-1-Alpha,Cct-Alpha
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tcp1, Cct1, Ccta
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Beta
Chain: B, J
Synonym: Tcp-1-Beta,Cct-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct2, 99d8.1, Cctb
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Gamma
Chain: C, K
Synonym: Tcp-1-Gamma,Cct-Gamma,Htric5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct3, Cctg, Tric5
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Delta
Chain: D, L
Synonym: Tcp-1-Delta,Cct-Delta,Stimulator Of Tar Rna-Bindin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct4, Cctd, Srb
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Epsilon
Chain: E, M
Synonym: Tcp-1-Epsilon,Cct-Epsilon
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct5, Ccte, Kiaa0098
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Zeta
Chain: F, N
Synonym: Tcp-1-Zeta,Acute Morphine Dependence-Related Prote Zeta-1,Htr3,Tcp20;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct6a, Cct6, Cctz
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Eta
Chain: G, O
Synonym: Tcp-1-Eta,Cct-Eta,Hiv-1 Nef-Interacting Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct7, Ccth, Nip7-1
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: T-Complex Protein 1 Subunit Theta
Chain: H, P
Synonym: Tcp-1-Theta,Cct-Theta,Chaperonin Containing T-Comp Polypeptide 1 Subunit 8,Renal Carcinoma Antigen Ny-Ren-15;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cct8, C21orf112, Cctq, Kiaa0002
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 1
Chain: 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfdn1, Pfd1
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 2
Chain: 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfdn2, Pfd2, Hspc231
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 3
Chain: 3
Synonym: Hibbj46,Von Hippel-Lindau-Binding Protein 1,Vhl-Bi Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vbp1, Pfdn3
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 4
Chain: 4
Synonym: Protein C-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfdn4, Pfd4
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 5
Chain: 5
Synonym: Myc Modulator 1,C-Myc-Binding Protein Mm-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfdn5, Mm1, Pfd5
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Prefoldin Subunit 6
Chain: 6
Synonym: Protein Ke2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfdn6, Hke2, Pfd6
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.20 Å
Gene
Ontology
ChainFunctionProcessComponent
1, 6


2


3


4


5


A, I


E, M


F, N


J, B


K, C


L, D


O, G


P, H


Primary referenceThe Chaperonin TRiC/CCT Associates with Prefoldin through a Conserved Electrostatic Interface Essential for Cellular Proteostasis., Gestaut D, Roh SH, Ma B, Pintilie G, Joachimiak LA, Leitner A, Walzthoeni T, Aebersold R, Chiu W, Frydman J, Cell. 2019 Apr 18;177(3):751-765.e15. doi: 10.1016/j.cell.2019.03.012. Epub 2019 , Apr 4. PMID:30955883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1148 Kb) [Save to disk]
  • Biological Unit Coordinates (6nrd.pdb1.gz) 1142 Kb
  • CSU: Contacts of Structural Units for 6NRD
  • Retrieve 6NRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NRD from S2C, [Save to disk]
    • View 6NRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NRD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nrd_4] [6nrd_H] [6nrd_I] [6nrd_N] [6nrd_M] [6nrd_A] [6nrd_1] [6nrd_3] [6nrd_J] [6nrd_5] [6nrd_P] [6nrd_K] [6nrd_F] [6nrd_E] [6nrd_O] [6nrd_6] [6nrd_G] [6nrd_C] [6nrd_2] [6nrd_L] [6nrd_B] [6nrd_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NRD
  • Community annotation for 6NRD at PDBWiki (http://pdbwiki.org)

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