6NTV Transcription date Jan 30, 2019
title Sftsv L Endonuclease Domain
authors W.Wang, G.K.Amarasinghe
compound source
Molecule: Rna Polymerase
Chain: A, B, C
Fragment: Endonuclease Domain, Residues 1-226
Engineered: Yes
 Organism_scientific: Severe Fever With Thrombocytopenia Vir
Organism_taxid: 1003835
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 43 21 2
R_factor 0.200 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.732 82.732 229.089 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Primary referenceThe Cap-Snatching SFTSV Endonuclease Domain Is an Antiviral Target., Wang W, Shin WJ, Zhang B, Choi Y, Yoo JS, Zimmerman MI, Frederick TE, Bowman GR, Gross ML, Leung DW, Jung JU, Amarasinghe GK, Cell Rep. 2020 Jan 7;30(1):153-163.e5. doi: 10.1016/j.celrep.2019.12.020. PMID:31914382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6ntv.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (6ntv.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (6ntv.pdb3.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 6NTV
  • CSU: Contacts of Structural Units for 6NTV
  • Structure Factors (841 Kb)
  • Retrieve 6NTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NTV from S2C, [Save to disk]
    • View 6NTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NTV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ntv_C] [6ntv_B] [6ntv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NTV
  • Community annotation for 6NTV at PDBWiki (http://pdbwiki.org)

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