6NYY Translocase date Feb 12, 2019
title Human M-Aaa Protease Afg3l2, Substrate-Bound
authors G.C.Lander, C.Puchades
compound source
Molecule: Afg3-Like Protein 2
Chain: A, B, C, D, E, F
Synonym: Paraplegin-Like Protein
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Afg3l2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Substrate
Chain: G, H, I, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk]
  • Biological Unit Coordinates (6nyy.pdb1.gz) 348 Kb
  • CSU: Contacts of Structural Units for 6NYY
  • Retrieve 6NYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NYY from S2C, [Save to disk]
  • View 6NYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NYY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nyy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nyy_E] [6nyy_J] [6nyy_D] [6nyy_A] [6nyy_H] [6nyy_B] [6nyy_F] [6nyy_C] [6nyy_I] [6nyy_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NYY
  • Community annotation for 6NYY at PDBWiki (http://pdbwiki.org)

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