6NZU Transferase, Oxidoreductase date Feb 14, 2019
title Structure Of The Human Frataxin-Bound Iron-Sulfur Cluster As Complex
authors N.G.Fox, X.Yu, F.Xidong, M.Alain, N.Joseph, S.D.Claire, B.Christin W.W.Yue
compound source
Molecule: Cysteine Desulfurase, Mitochondrial
Chain: A, E
Fragment: Unp Residues 56-457
Ec: 2.8.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfs1, Nifs, Hussy-08
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Lyr Motif-Containing Protein 4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyrm4, C6orf149, Isd11, Cgi-203
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Acyl Carrier Protein
Chain: C, G
Synonym: Acp
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Acpp, Dql48_09575, Eol36_14065
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Iron-Sulfur Cluster Assembly Enzyme Iscu, Mitocho
Chain: D, H
Fragment: Unp Residues 35-157
Synonym: Nifu-Like N-Terminal Domain-Containing Protein, Ni Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Iscu, Nifun
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Frataxin, Mitochondrial
Chain: I, J
Fragment: Unp Residues 81-210
Synonym: Friedreich Ataxia Protein, Fxn
Ec: 1.16.3.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fxn, Frda, X25
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand 8Q1, PLP, ZN enzyme Transferase E.C.2.8.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


J, I


Primary referenceStructure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism., Fox NG, Yu X, Feng X, Bailey HJ, Martelli A, Nabhan JF, Strain-Damerell C, Bulawa C, Yue WW, Han S, Nat Commun. 2019 May 17;10(1):2210. doi: 10.1038/s41467-019-09989-y. PMID:31101807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (6nzu.pdb1.gz) 288 Kb
  • LPC: Ligand-Protein Contacts for 6NZU
  • CSU: Contacts of Structural Units for 6NZU
  • Retrieve 6NZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NZU from S2C, [Save to disk]
  • View 6NZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NZU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nzu_I] [6nzu_D] [6nzu_G] [6nzu_F] [6nzu_H] [6nzu_A] [6nzu_E] [6nzu_C] [6nzu_B] [6nzu_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NZU
  • Community annotation for 6NZU at PDBWiki (http://pdbwiki.org)

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