6O19 Transcription Dna date Feb 18, 2019
title Crystal Structure Of Pho7 Complex With Pho1 Promoter Site 2
authors A.Garg, Y.Goldgur, S.Shuman
compound source
Molecule: Transcription Factor Pho7
Chain: A
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Gene: Pi067, Spbc27b12.11c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'- D(Tptpaptptpcpgpgpapapaptptpapapapapapcp
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_taxid: 4896

Molecule: Dna (5'- D(Gptptptptptpapaptptptpcpcpgpapaptpapap
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_taxid: 4896
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.169 37.581 57.564 90.00 104.23 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of fission yeast transcription factor Pho7 bound to pho1 promoter DNA and effect of Pho7 mutations on DNA binding and phosphate homeostasis., Garg A, Goldgur Y, Sanchez AM, Schwer B, Shuman S, Mol Cell Biol. 2019 Apr 22. pii: MCB.00132-19. doi: 10.1128/MCB.00132-19. PMID:31010807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (6o19.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 6O19
  • CSU: Contacts of Structural Units for 6O19
  • Structure Factors (382 Kb)
  • Retrieve 6O19 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O19 from S2C, [Save to disk]
  • View 6O19 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O19
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o19_C] [6o19_B] [6o19_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O19
  • Community annotation for 6O19 at PDBWiki (http://pdbwiki.org)

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