6O31 Structural Protein date Feb 25, 2019
title Crystal Structure Of The Actin-Binding Domain Of Human Alpha
authors G.Birrane, D.Feng
compound source
Molecule: Alpha-Actinin-4
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actn4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.208 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.069 38.069 302.655 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.51 Å
Primary referencePhosphorylation of ACTN4 Leads to Podocyte Vulnerability and Proteinuric Glomerulosclerosis., Feng D, Kumar M, Muntel J, Gurley SB, Birrane G, Stillman IE, Ding L, Wang M, Ahmed S, Schlondorff J, Alper SL, Ferrante T, Marquez SL, Ng CF, Novak R, Ingber DE, Steen H, Pollak MR, J Am Soc Nephrol. 2020 Jul;31(7):1479-1495. doi: 10.1681/ASN.2019101032. Epub, 2020 Jun 15. PMID:32540856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (6o31.pdb1.gz) 80 Kb
  • CSU: Contacts of Structural Units for 6O31
  • Structure Factors (968 Kb)
  • Retrieve 6O31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O31 from S2C, [Save to disk]
    • View 6O31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O31
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o31_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O31
  • Community annotation for 6O31 at PDBWiki (http://pdbwiki.org)

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