6O39 Signaling Protein date Feb 26, 2019
title Crystal Structure Of Frizzled 5 Crd In Complex With F2.I Fab
authors S.Raman, M.Beilschmidt, J.Fransson, J.P.Julien
compound source
Molecule: Antibody F2.I Fab, Light Chain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Antibody F2.I Fab, Heavy Chain
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Frizzled-5
Chain: C
Synonym: Hfz5,Fze5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd5, C2orf31
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.196 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.405 101.405 196.497 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, EDO, NAG enzyme
Primary referenceStructure-guided design fine-tunes pharmacokinetics, tolerability, and antitumor profile of multispecific frizzled antibodies., Raman S, Beilschmidt M, To M, Lin K, Lui F, Jmeian Y, Ng M, Fernandez M, Fu Y, Mascall K, Duque A, Wang X, Pan G, Angers S, Moffat J, Sidhu SS, Magram J, Sinclair AM, Fransson J, Julien JP, Proc Natl Acad Sci U S A. 2019 Mar 20. pii: 1817246116. doi:, 10.1073/pnas.1817246116. PMID:30894493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (6o39.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 6O39
  • CSU: Contacts of Structural Units for 6O39
  • Structure Factors (477 Kb)
  • Retrieve 6O39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O39 from S2C, [Save to disk]
  • View 6O39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o39_B] [6o39_C] [6o39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O39
  • Community annotation for 6O39 at PDBWiki (http://pdbwiki.org)

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