6O3N De Novo Protein date Feb 26, 2019
title Cross-Alpha Amyloid-Like Structure Alphaama
authors S.Q.Zhang, L.Liu, W.F.Degrado
compound source
Molecule: Cross-Alpha Amyloid-Like Structure Alphaama
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic
Organism_taxid: 32630
symmetry Space Group: I 41 2 2
R_factor 0.297 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.816 164.816 164.134 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
Primary referenceDesigned peptides that assemble into cross-alpha amyloid-like structures., Zhang SQ, Huang H, Yang J, Kratochvil HT, Lolicato M, Liu Y, Shu X, Liu L, DeGrado WF, Nat Chem Biol. 2018 Jul 30. pii: 10.1038/s41589-018-0105-5. doi:, 10.1038/s41589-018-0105-5. PMID:30061717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (6o3n.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 6O3N
  • Structure Factors (593 Kb)
  • Retrieve 6O3N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O3N from S2C, [Save to disk]
    • View 6O3N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O3N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o3n_M] [6o3n_J] [6o3n_G] [6o3n_D] [6o3n_H] [6o3n_O] [6o3n_A] [6o3n_L] [6o3n_P] [6o3n_C] [6o3n_N] [6o3n_F] [6o3n_B] [6o3n_K] [6o3n_E] [6o3n_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O3N
  • Community annotation for 6O3N at PDBWiki (http://pdbwiki.org)

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