6O3O Immune System date Feb 27, 2019
title Structure Of Human Dnam-1 (Cd226) Bound To Nectin-Like Prote (Necl-5)
authors F.A.Deuss, G.M.Watson, J.Rossjohn, R.Berry
compound source
Molecule: Cd226 Antigen
Chain: A, B
Synonym: Dnax Accessory Molecule 1,Dnam-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd226, Dnam1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Poliovirus Receptor
Chain: C, D
Synonym: Nectin-Like Protein 5,Necl-5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pvr, Pvs
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.337 182.269 146.594 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (6o3o.pdb1.gz) 332 Kb
  • CSU: Contacts of Structural Units for 6O3O
  • Structure Factors (2238 Kb)
  • Retrieve 6O3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O3O from S2C, [Save to disk]
  • View 6O3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O3O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6o3o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o3o_A] [6o3o_D] [6o3o_B] [6o3o_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O3O
  • Community annotation for 6O3O at PDBWiki (http://pdbwiki.org)

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