6O5M Cell Cycle date Mar 04, 2019
title Tubulin-Rb3_sld-Ttl In Complex With Compound 10bb
authors G.Kumar, Y.Wang, W.Li, S.W.White
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A, C
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Tubulin Beta-2b Chain
Chain: B, D
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Stathmin-4
Chain: E
Synonym: Stathmin-Like Protein B3,Rb3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stmn4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tubulin Tyrosine Ligase
Chain: F
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Ttl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.966 157.721 181.615 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACP, CA, G8K, GDP, GOL, GTP, MES, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


E


F


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (6o5m.pdb1.gz) 730 Kb
  • LPC: Ligand-Protein Contacts for 6O5M
  • CSU: Contacts of Structural Units for 6O5M
  • Structure Factors (1756 Kb)
  • Retrieve 6O5M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O5M from S2C, [Save to disk]
    • View 6O5M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O5M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o5m_A] [6o5m_E] [6o5m_D] [6o5m_F] [6o5m_B] [6o5m_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O5M
  • Community annotation for 6O5M at PDBWiki (http://pdbwiki.org)

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