6O7G Transcription date Mar 07, 2019
title Solution Structure Of Mll4 Phd6 Domain In Complex With Histo Peptide
authors Y.Zhang, T.G.Kutateladze
compound source
Molecule: Histone-Lysine N-Methyltransferase 2d
Chain: B
Fragment: Residues 1503-1562
Synonym: Lysine N-Methyltransferase 2d,All1-Related Protein Myeloidlymphoid Or Mixed-Lineage Leukemia Protein 2;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2d, Alr, Mll2, Mll4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ALY, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceSelective binding of the PHD6 finger of MLL4 to histone H4K16ac links MLL4 and MOF., Zhang Y, Jang Y, Lee JE, Ahn J, Xu L, Holden MR, Cornett EM, Krajewski K, Klein BJ, Wang SP, Dou Y, Roeder RG, Strahl BD, Rothbart SB, Shi X, Ge K, Kutateladze TG, Nat Commun. 2019 May 24;10(1):2314. doi: 10.1038/s41467-019-10324-8. PMID:31127101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (6o7g.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 6O7G
  • CSU: Contacts of Structural Units for 6O7G
  • Original NMR restraints for 6O7G from PDB
  • Retrieve 6O7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O7G from S2C, [Save to disk]
  • View 6O7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o7g_A] [6o7g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O7G
  • Community annotation for 6O7G at PDBWiki (http://pdbwiki.org)

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