6O8F Dna Binding Protein Dna date Mar 10, 2019
title Crystal Structure Of Uvrb Bound To Duplex Dna
authors S.J.Lee, G.L.Verdine
compound source
Molecule: Uvrabc System Protein B
Chain: A, B
Synonym: Protein Uvrb,Excinuclease Abc Subunit B
Engineered: Yes
 Organism_scientific: Bacillus Caldotenax
Organism_taxid: 1395
Gene: Uvrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gpcptpcptpapgpaptptptptpcpaptpapcpgpgp
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Gpcpcpgptpaptpgpcpcpapaptpcptpapgpapgp
Chain: D, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.157 265.250 68.315 90.00 114.39 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand ACT, CL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (6o8f.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (6o8f.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 6O8F
  • CSU: Contacts of Structural Units for 6O8F
  • Structure Factors (1348 Kb)
  • Retrieve 6O8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O8F from S2C, [Save to disk]
    • View 6O8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O8F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o8f_C] [6o8f_E] [6o8f_F] [6o8f_D] [6o8f_B] [6o8f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O8F
  • Community annotation for 6O8F at PDBWiki (http://pdbwiki.org)

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