6OA6 Structural Protein date Mar 15, 2019
title Crystal Structure Of The Actin-Binding Domain Of Human Alpha
authors G.Birrane, D.Feng
compound source
Molecule: Alpha-Actinin-4
Chain: A
Synonym: Non-Muscle Alpha-Actinin 4
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actn4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.134 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.589 61.732 89.534 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.37 Å
ligand GOL enzyme
Primary referencePhosphorylation of ACTN4 Leads to Podocyte Vulnerability and Proteinuric Glomerulosclerosis., Feng D, Kumar M, Muntel J, Gurley SB, Birrane G, Stillman IE, Ding L, Wang M, Ahmed S, Schlondorff J, Alper SL, Ferrante T, Marquez SL, Ng CF, Novak R, Ingber DE, Steen H, Pollak MR, J Am Soc Nephrol. 2020 Jul;31(7):1479-1495. doi: 10.1681/ASN.2019101032. Epub, 2020 Jun 15. PMID:32540856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (6oa6.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 6OA6
  • CSU: Contacts of Structural Units for 6OA6
  • Structure Factors (1391 Kb)
  • Retrieve 6OA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OA6 from S2C, [Save to disk]
  • View 6OA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OA6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oa6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OA6
  • Community annotation for 6OA6 at PDBWiki (http://pdbwiki.org)

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