6ODM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
B, O


C


D, 5


G, K


H, A, 7, 6


P, F, E, L


X, W, T, S


Primary referenceCryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome., Liu YT, Jih J, Dai X, Bi GQ, Zhou ZH, Nature. 2019 Jun;570(7760):257-261. doi: 10.1038/s41586-019-1248-6. Epub 2019 May, 29. PMID:31142842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1211 Kb) [Save to disk]
  • Biological Unit Coordinates (6odm.pdb1.gz) 1178 Kb
  • CSU: Contacts of Structural Units for 6ODM
  • Retrieve 6ODM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ODM from S2C, [Save to disk]
    • View 6ODM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6odm_5] [6odm_6] [6odm_7] [6odm_A] [6odm_B] [6odm_C] [6odm_D] [6odm_E] [6odm_F] [6odm_G] [6odm_H] [6odm_K] [6odm_L] [6odm_O] [6odm_P] [6odm_S] [6odm_T] [6odm_W] [6odm_X]
  • SWISS-PROT database:

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