6OEB Dna Binding Protein Dna date Mar 27, 2019
title Crystal Structure Of Hmces Srap Domain In Complex With 3' Ov
authors L.Halabelian, M.Ravichandran, Y.Li, H.Zeng, C.Bountra, A.M.Edward C.H.Arrowsmith, Structural Genomics Consortium (Sgc)
compound source
Molecule: Embryonic Stem Cell-Specific 5-Hydroxymethylcytos Binding Protein;
Chain: A
Fragment: Srap Domain (Unp Residues 2-270)
Synonym: Es Cell-Specific 5hmc-Binding Protein, Putative Pe Srapd1, Srap Domain-Containing Protein 1, Hmces;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmces, C3orf37, Dc12, Srapd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpcpapgpapcpgptpt)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gptpcptpgpg)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 1 2 1
R_factor 0.206 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.728 51.151 149.210 90.00 92.77 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (6oeb.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 6OEB
  • CSU: Contacts of Structural Units for 6OEB
  • Structure Factors (1020 Kb)
  • Retrieve 6OEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OEB from S2C, [Save to disk]
    • View 6OEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OEB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oeb_B] [6oeb_A] [6oeb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OEB
  • Community annotation for 6OEB at PDBWiki (http://pdbwiki.org)

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